PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT16701
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family DBB
Protein Properties Length: 292aa    MW: 31067.9 Da    PI: 6.5952
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT16701genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.93.5e-07446541
  zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
               C+ +e + ++ fC  ++  lC+ C    H+       H++ +
  EMT16701  4 QCDVCEAEAASVFCCADEAALCDACDRRVHRAnklagkHRRLS 46
              7*****************************7688888888765 PP

2zf-B_box16.91.4e-051031251335
  zf-B_box  13 elqlfCedCqqllCedClleeHk 35 
               +  lfC++++  lC++C ++ H 
  EMT16701 103 RGLLFCKEDRAILCRECDVQVHT 125
               4679****************994 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.3E-11147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.367147IPR000315B-box-type zinc finger
CDDcd000212.29E-7347No hitNo description
PfamPF006435.3E-6446IPR000315B-box-type zinc finger
SMARTSM003365.9E-790138IPR000315B-box-type zinc finger
CDDcd000211.36E-4100138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009641Biological Processshade avoidance
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MKVQCDVCEA EAASVFCCAD EAALCDACDR RVHRANKLAG KHRRLSLLHP SPASSSSPSP  60
KPPLCDICQV GYSTNQERFQ ICVPFVLLRR ELMLCRCGLQ EKRGLLFCKE DRAILCRECD  120
VQVHTASELT RRHGRFLLTG VRVSSAPAES PAPSGQEEEG NSTSPCIADS CSGDASGTAS  180
ASASASDGSS ISEYLTKTLP GWHVEDFLLD DAAVAVSSNK PYQGGGLARI GGPQEGEGYP  240
AWAGQEQLIG GVVVAAGERA SRELWVPQMH AGAAWAGSKR PRPSSLGSSS YW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1278282KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2562640.0AC256264.1 Hordeum vulgare clone HV_Mba727-J05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634022.11e-110PREDICTED: B-box zinc finger protein 20 isoform X1
TrEMBLN1QZQ80.0N1QZQ8_AEGTA; Putative salt tolerance-like protein
STRINGMLOC_61366.21e-117(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23923679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.18e-23salt tolerance homolog2